com.anji.integration
Class ChromosomeToNetworkXml

java.lang.Object
  com.anji.integration.ChromosomeToNetworkXml

All Implemented Interfaces:

Configurable

public class ChromosomeToNetworkXml
extends java.lang.Object
implements Configurable

Converts chromosome to activator, which it then uses to write network XML according to NEVT data model.

Author:

Philip Tucker

Constructor Summary

ChromosomeToNetworkXml()

Method Summary

void	init(Properties props) See Parameter Details for specific property settings.
static void	main(java.lang.String[] args) Saves to persistence network XML representation of chromosomes.
java.lang.String	toNetworkXml(java.lang.String chromId) Transcribes chromosome to network and generates XML.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ChromosomeToNetworkXml

public ChromosomeToNetworkXml()

Method Detail

init

public void init(Properties props)

See Parameter Details for specific property settings.

Specified by:

init in interface Configurable

Parameters:

props - configuration parameters

toNetworkXml

public java.lang.String toNetworkXml(java.lang.String chromId)
                              throws java.lang.Exception

Transcribes chromosome to network and generates XML.

Parameters:

chromId - persistence ID of chromosome

Returns:

XML representation of network

Throws:

java.lang.Exception

main

public static void main(java.lang.String[] args)
                 throws java.lang.Exception

Saves to persistence network XML representation of chromosomes.

Parameters:

args - list of chromosome IDs

Throws:

java.lang.Exception